Publications
You can find a full list of our publications here
- Global Positioning System: Understanding Long Noncoding RNAs through Subcellular Localization
J Carlevaro-Fita, R Johnson
Molecular cell (2019)
PMID: 30587508; DOI: 10.1016/j.molcel.2019.02.008
- Hacking the Cancer Genome: Profiling Therapeutically Actionable Long Non-coding RNAs Using CRISPR-Cas9 Screening
R Esposito, N Bosch, A Lanzós, T Polidori, C Pulido-Quetglas, R Johnson
Cancer cell (2019)
PMID: 30827888; DOI: 10.1016/j.ccell.2019.01.019
- Ancient exapted transposable elements promote nuclear enrichment of human long noncoding RNAs
J Carlevaro-Fita, T Polidori, M Das, C Navarro, TI Zoller, R Johnson
Genome research (2018)
PMID: 30587508; DOI: 10.1101/gr.229922.117
- GENCODE reference annotation for the human and mouse genomes
A Frankish, M Diekhans, AM Ferreira, R Johnson, ...
NAR (2018)
PMID: 30357393; DOI: 10.1093/nar/gky955
- Capturing a Long Look at Our Genetic Library
J Lagarde, R Johnson
Cell systems (2018)
PMID: 29494803; DOI: 10.1016/j.cels.2018.02.003
- Nearly all new protein-coding predictions in the CHESS database are not protein-coding
I Jungreis, ML Tress, J Mudge, C Sisu, T Hunt, R Johnson, ...
bioRxiv, 360602 (2018)
- Towards a complete map of the human long non-coding RNA transcriptome
B Uszczynska-Ratajczak, J Lagarde, A Frankish, R Guigó, R Johnson
Nature Reviews Genetics (2018)
PMID: 29795125; DOI: 10.1038/s41576-018-0017-y
- High-throughput annotation of full-length long noncoding RNAs with capture long-read sequencing
Lagarde J, Uszczynska-Ratajczak B, Carbonell S, Pérez-Lluch S, Abad A, Davis C, Gingeras TR, Frankish A, Harrow J, Guigo R, Johnson R.
Nature Genetics (2017)
PMID: 29106417; DOI: 10.1038/ng.3988
- LncATLAS database for subcellular localization of long noncoding RNAs
Mas-Ponte D, Carlevaro-Fita J, Palumbo E, Hermoso Pulido T, Guigo R, Johnson R.
RNA (2017)
PMID: 28386015; DOI: 10.1261/rna.060814.117
- Scalable Design of Paired CRISPR Guide RNAs for Genomic Deletion
Pulido-Quetglas C, Aparicio-Prat E, Arnan C, Polidori T, Hermoso T, Palumbo E, Ponomarenko J, Guigo R, Johnson R.
PLoS Computational Biology (2017)
PMID: 28253259; DOI: 10.1371/journal.pcbi.1005341
- Discovery of Cancer Driver Long Noncoding RNAs across 1112 Tumour Genomes: New Candidates and Distinguishing Features
Lanzós A, Carlevaro-Fita J, Mularoni L, Reverter F, Palumbo E, Guigó R, Johnson R.
Scientific Reports (2017)
PMID: 28128360; DOI: 10.1038/srep41544
- Cytoplasmic long noncoding RNAs are frequently bound to and degraded at ribosomes in human cells
Carlevaro-Fita J, Rahim A, Guigó R, Vardy LA, Johnson R.
RNA (2016)
PMID: 27090285; DOI: 10.1261/rna.053561.115
- DECKO: Single-oligo, dual-CRISPR deletion of genomic elements including long non-coding RNAs
Aparicio-Prat E, Arnan C, Sala I, Bosch N, Guigó R, Johnson R.
BMC Genomics (2015)
PMID: 26493208; DOI: 10.1186/s12864-015-2086-z